Western media said the convoy was believed to be carrying weaponries to the Lebanese Hezbollah militant group, a staunch ally to Syria.
Decrying the move as "flagrant intervention" to the Syrian airspace, the military contended that Israel is the driving force and beneficiary of the terrorist acts committed in Syria with the partnership of Qatar and Turkey.
It said that the Israeli move would not dissuade Syria from keeping on supporting the resistance movements, the foremost of which is the Palestinian cause.
While condemning the move, the military statement said nothing about a possible payback for the Israeli aggression.
Syria has technically been in a state of war with Israel since its creation in 1948. Their enmity has risen with the Syrian administration rendering support to the Hezbollah.
Israel captured the Golan Heights from Syria during the 1967 Arab-Israel war. Syria fought another war in 1973 after which it regained small parts of land that Israel occupied six years earlier.
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